{
  "_id": "6a15b6a1acfb0bcc41d66d60",
  "Package": "reslr",
  "Title": "Modelling Relative Sea Level Data",
  "Version": "0.2.0",
  "Authors@R": "c(\nperson(\"Maeve\", \"Upton\", email= \"uptonmaeve010@gmail.com\", role = c(\"cph\", \"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3185-7731\")),\nperson(\"Andrew\", \"Parnell\", role = \"aut\"),\nperson(\"Niamh\", \"Cahill\", role = \"aut\"))",
  "URL": "https://github.com/maeveupton/reslr,\nhttps://maeveupton.github.io/reslr/",
  "BugReports": "https://github.com/maeveupton/reslr/issues",
  "Language": "en-US",
  "Description": "The Bayesian modelling of relative sea-level data using a\ncomprehensive approach that incorporates various statistical\nmodels within a unifying framework. Details regarding each\nstatistical models; linear regression (Ashe et al 2019)\n<doi:10.1016/j.quascirev.2018.10.032>, change point models\n(Cahill et al 2015) <doi:10.1088/1748-9326/10/8/084002>,\nintegrated Gaussian process models (Cahill et al 2015)\n<doi:10.1214/15-AOAS824>, temporal splines (Upton et al 2025)\n<doi:10.32614/RJ-2024-018>, spatio-temporal splines (Upton et\nal 2025) <doi:10.32614/RJ-2024-018> and generalised additive\nmodels (Upton et al 2025) <doi:10.1093/jrsssc/qlae044>. This\npackage facilitates data loading, model fitting and result\nsummarisation. Notably, it accommodates the inherent\nmeasurement errors found in relative sea-level data across\nmultiple dimensions, allowing for their inclusion in the\nstatistical models.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "jags libicu-dev libnetcdf-dev",
  "Repository": "https://maeveupton.r-universe.dev",
  "Date/Publication": "2026-05-26 10:00:48 UTC",
  "RemoteUrl": "https://github.com/maeveupton/reslr",
  "RemoteRef": "HEAD",
  "RemoteSha": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 14:59:11 UTC",
    "User": "root"
  },
  "Author": "Maeve Upton [cph, aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3185-7731>),\nAndrew Parnell [aut],\nNiamh Cahill [aut]",
  "Maintainer": "Maeve Upton <uptonmaeve010@gmail.com>",
  "MD5sum": "67cf3046d6187ed4d915a6efdbf334b1",
  "_user": "maeveupton",
  "_type": "src",
  "_file": "reslr_0.2.0.tar.gz",
  "_fileid": "545dd5c68612aa560e2a6fe5797385fa59565049f63850a8be0e2b6193eb964c",
  "_filesize": 3613413,
  "_sha256": "545dd5c68612aa560e2a6fe5797385fa59565049f63850a8be0e2b6193eb964c",
  "_created": "2026-05-26T14:59:11.000Z",
  "_published": "2026-05-26T15:05:05.371Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77891205535,
      "time": 258,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7218230621"
    },
    {
      "job": 77891205648,
      "time": 263,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7218232818"
    },
    {
      "job": 77891205581,
      "time": 250,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7218231388"
    },
    {
      "job": 77891205591,
      "time": 224,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7218223597"
    },
    {
      "job": 77889983160,
      "time": 326,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7218115997"
    },
    {
      "job": 77891205539,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7218167040"
    },
    {
      "job": 77891205582,
      "time": 273,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7218236706"
    },
    {
      "job": 77891205528,
      "time": 275,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7218238020"
    },
    {
      "job": 77891205599,
      "time": 304,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7218250626"
    }
  ],
  "_buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/maeveupton/reslr",
  "_commit": {
    "id": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
    "author": "Maeve Upton <uptonmaeve010@gmail.com>",
    "committer": "Maeve Upton <uptonmaeve010@gmail.com>",
    "message": "Create CRAN-SUBMISSION\n",
    "time": 1779789648
  },
  "_maintainer": {
    "name": "Maeve Upton",
    "email": "uptonmaeve010@gmail.com",
    "login": "maeveupton",
    "orcid": "0000-0002-3185-7731",
    "description": "",
    "uuid": 60891603
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fastDummies",
      "role": "Imports"
    },
    {
      "package": "fields",
      "role": "Imports"
    },
    {
      "package": "geosphere",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "ncdf4",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "posterior",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "R2jags",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidybayes",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    }
  ],
  "_owner": "maeveupton",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-20",
      "n": 25
    },
    {
      "week": "2026-22",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "maeveupton",
      "count": 534,
      "uuid": 60891603
    },
    {
      "user": "ncahill89",
      "count": 1,
      "uuid": 19578961
    }
  ],
  "_userbio": {
    "uuid": 60891603,
    "type": "user",
    "name": "Maeve Upton"
  },
  "_downloads": {
    "count": 163,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/reslr"
  },
  "_devurl": "https://github.com/maeveupton/reslr",
  "_pkgdown": "https://maeveupton.github.io/reslr/",
  "_searchresults": 27,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/reslr.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/maeveupton/reslr",
  "_realowner": "maeveupton",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2023-06-15"
    },
    {
      "version": "0.2.0",
      "date": "2026-05-26"
    }
  ],
  "_exports": [
    "%>%",
    "cross_val_check",
    "reslr_load",
    "reslr_mcmc"
  ],
  "_datasets": [
    {
      "name": "NAACproxydata",
      "title": "Relative Sea level example dataset",
      "object": "NAACproxydata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Region",
        "Site",
        "Latitude",
        "Longitude",
        "RSL",
        "Age",
        "Age_err",
        "RSL_err"
      ],
      "rows": 1715,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cross_val_check",
      "title": "Cross validation check for spline in time, spline in space time and GAM in order to select the most appropriate number of knots when creating basis functions.",
      "topics": [
        "cross_val_check"
      ]
    },
    {
      "page": "NAACproxydata",
      "title": "Relative Sea level example dataset",
      "topics": [
        "NAACproxydata"
      ]
    },
    {
      "page": "plot.reslr_input",
      "title": "Plot raw data with measurement uncertainty.",
      "topics": [
        "plot.reslr_input"
      ]
    },
    {
      "page": "plot.reslr_output",
      "title": "Plotting the results for each statistical model from the 'reslr_mcmc' function.",
      "topics": [
        "plot.reslr_output"
      ]
    },
    {
      "page": "print.reslr_input",
      "title": "Print a reslr output object which is created from the 'reslr_load' function.",
      "topics": [
        "print.reslr_input"
      ]
    },
    {
      "page": "print.reslr_output",
      "title": "Print a reslr output object which is created by the 'reslr_mcmc' function.",
      "topics": [
        "print.reslr_output"
      ]
    },
    {
      "page": "reslr_load",
      "title": "Loading in data for the 'reslr' package",
      "topics": [
        "reslr_load"
      ]
    },
    {
      "page": "reslr_mcmc",
      "title": "Run a 'reslr_input' object through the main reslr Markov chain Monte Carlo (MCMC) function using a chosen statistical model",
      "topics": [
        "reslr_mcmc"
      ]
    },
    {
      "page": "summary.reslr_output",
      "title": "Produces summaries and convergence diagnostics for an object created with 'reslr_mcmc'.",
      "topics": [
        "summary.reslr_output"
      ]
    }
  ],
  "_readme": "https://github.com/maeveupton/reslr/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "arrayhelpers",
    "backports",
    "boot",
    "checkmate",
    "cli",
    "coda",
    "cpp11",
    "data.table",
    "distributional",
    "dotCall64",
    "dplyr",
    "farver",
    "fastDummies",
    "fields",
    "generics",
    "geosphere",
    "ggdist",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "maps",
    "matrixStats",
    "ncdf4",
    "numDeriv",
    "pillar",
    "pkgconfig",
    "plyr",
    "posterior",
    "purrr",
    "quadprog",
    "R2jags",
    "R2WinBUGS",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rjags",
    "rlang",
    "S7",
    "scales",
    "spam",
    "stringi",
    "stringr",
    "svUnit",
    "tensorA",
    "tibble",
    "tidybayes",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "advanced_reslr.Rmd",
      "filename": "advanced_reslr.html",
      "title": "reslr: advanced",
      "author": "Maeve Upton, Andrew Parnell and Niamh Cahill",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Errors in Variables Integrated Gaussian Process with detrended data",
        "Using a different input age unit",
        "Including Tide Gauge data",
        "Plotting techniques",
        "Accessing the posterior samples",
        "Smoothing settings for splines",
        "Cross Validation tests for Spline and NI-GAM"
      ],
      "created": "2023-05-11 18:21:10",
      "modified": "2024-02-12 13:56:02",
      "commits": 33
    },
    {
      "source": "quick_start.Rmd",
      "filename": "quick_start.html",
      "title": "reslr: quick start guide",
      "author": "Maeve Upton, Andrew Parnell and Niamh Cahill",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Step 1: install reslr",
        "Step 2: load in the data into reslr",
        "Step 3: plot the data",
        "Step 4:  Run your statistical model and check convergence",
        "Step 5: Plot the results"
      ],
      "created": "2023-05-11 12:32:40",
      "modified": "2026-05-14 16:47:22",
      "commits": 18
    },
    {
      "source": "reslr.Rmd",
      "filename": "reslr.html",
      "title": "reslr: Statistical Models for examining Relative Sea Level Change in R",
      "author": "Maeve Upton, Andrew Parnell & Niamh Cahill",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation of the reslr package",
        "Considerations before running reslr",
        "Installating JAGS software",
        "Working with scripts",
        "Inputting User's data",
        "Tide Gauge Data",
        "Glacial Isostatic Adjustment (GIA)",
        "Example Data Set",
        "How to run reslr",
        "Errors-in-Variables Simple Linear Regression (\"eiv_slr_t\")",
        "Errors-in-Variable Change Point Model (\"eiv_cp_t\")",
        "Errors-in-Variable Integrated Gaussian Process Model (\"eiv_igp_t\")",
        "Noisy input spline in time (\"ni_spline_t\")",
        "Noisy input spline in space time (\"ni_spline_st\")",
        "Noisy Input Generalised Additive Model for decomposition of response signal (\"ni_gam_decomp\")",
        "Appendix - suggested reading"
      ],
      "created": "2023-03-13 11:34:55",
      "modified": "2026-05-14 16:47:22",
      "commits": 97
    }
  ],
  "_score": 5.510545010206612,
  "_indexed": true,
  "_nocasepkg": "reslr",
  "_universes": [
    "maeveupton"
  ],
  "_previous": "0.1.2",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:44.000Z",
      "distro": "noble",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "0417244767d39e4fe2f5007cc6957b27038de78885d60eeb98133e0e9a2d8de8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:43.000Z",
      "distro": "noble",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "b2f18c8a8062c0056efe2595091e72b14a097eb020441421e3c5e45a0f0af16e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:34.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "199c1c2c35d39616a622e6226c6f590376d7a2a535b48067ee930d59fa32b756",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:34.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "b8ba5dc2deea8ef71e0af345292f5c2ed7c8b0ff4fe54b23902726bdf703f9d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:28.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "4c90b8ad33a2cc5e39e7c0a23f0761080588c2f72e4f3d30bdf2a030eba7a6c9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-26T15:00:37.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "5335c147ebaf50ba1a96da70a74918f199e60e3b48c32d678364dbf9370fe08c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-26T15:00:47.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "687f1809e9deaf1dab974bf87b46755e07ce62366723428351a5e4c1477cfd11",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-26T15:01:00.000Z",
      "commit": "9e22beb382aa0cc45049dcdc3a0e743d7b1169d3",
      "fileid": "ccdbb9217604a801ee170c3aaedc12ba030f27a7aeb507c56d48aa859303e7f7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maeveupton/actions/runs/26455968534"
    }
  ]
}